Neurodatabase. org: networking the microelectrode
D Gardner - Nature neuroscience, 2004 - nature.com
Electrophysiological signals report activity of single neurons, neuronal arrays and networks.
Our understanding of neural coding, information transmission and brain processes would be
aided if such data could be made available for further analyses that could integrate and ...
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[CITATION] Open neurodatabase access by Java-mediated controlled-vocabulary neuron terms and experimental protocols
D Gardner, M Abato... - Soc Neurosci Abstr, 1998
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[PDF] BrainML and GENIE: Neuroinformatics schemas for neuroscience data sharing
[PDF] from neurodatabase.org
D Gardner, Y Xiao, M Abato... - Society for ..., 2002 - neurodatabase.org
... informational and other algorithms. URLS : • BrainML, GENIE & BrainMetaL:
brainml.org • Our cortical database: neurodatabase.org • Human Brain Project:
www.nimh.nih.gov /neuroinformatics/index.cfm 4. BrainML Describes ...
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NeuroDatabase: multimedia exploration of the nervous system.
[PDF] from nih.gov
SL Wertheim - Proceedings of the Annual Symposium on ..., 1991 - ncbi.nlm.nih.gov
The primary contents of the database are research results in neuroanatomy and regional
biochemistry. We support collaborative work among laboratories using a combination of localand
shared components. Each laboratory can have its own, private copy of the database to ...
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A neurodatabase system for mammographic screening
J Sklansky, EY Tao, C Ornes... - ... -Based Medical Systems ..., 1998 - ieeexplore.ieee.org
Abstract A novel integration of a neural network and a mammographic database provides a
promising means of amplifying the radiologist's power to screen mammograms. The
principal novelty of this system is a neural network that produces both a classifier and a ...
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Visualization in the neurosciences: utility in research, teaching, and clinical practice
SA Tobet, JC King, SL Wertheim... - ... , 1992. Visualization'92, ..., 1992 - ieeexplore.ieee.org
... card. Steven L. Wertheim - NeuroDatabase: Managing images and graphics from
anatomical experiments. NeuroDatabase is an information tool for neuroscience
that is being developed to aid research and teaching. It focuses ...
All 5 versions - Import into BibTeX
Issues and expectations for EMG decomposition
KC McGill - Supplements to Clinical Neurophysiology, 2009 - Elsevier
... These include PhysioNet (http://www.physionet.org) a research resource for complex physiologic
signals including ECG, EEG, and gait; Neurodatabase (http://www.neurodatabase.org), a public
basic neuroscience database; the Brain Resource International Database, which ...
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Presenting Interactive Image Databases on the Web Using Java
SL Wertheim - Proceedings of the AMIA Symposium, 1998 - ncbi.nlm.nih.gov
... [PubMed]; Wertheim SL. NeuroDatabase: multimedia exploration of the nervous system. Proc
Annu Symp Comput Appl Med Care. 1991:985-986. [PMC free article] [PubMed]; Wertheim
SL. NeuroDatabase: multimedia exploration of the nervous system. ...
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Visual mining of neuro-metaspaces
[PDF] from liu.se
SH Joshi, I Bowman, R Jennings... - ACM SIGGRAPH 2010 ..., 2010 - dl.acm.org
... Instead of pro- viding a restricted, unidimensional view of the data, we seek to place a
multi-dimensional view of the entire neurodatabase at the user's disposal. With the aim of visual
navigation of complete neuro-repositories, we introduce the concept of brain meta-spaces. ...
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[CITATION] Neuroinformatics for
D Gardner, M Abato, KH Knuth... - Databasing the brain: from data to ..., 2005 - Wiley
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[PDF] Neuroanalysis. Org: Information-Theoretic and Extended Analyses of Neural Coding
[PDF] from neuroanalysis.org
MA Repucci, DH Goldberg, E Chan... - Biophysical ..., 2010 - neuroanalysis.org
... We thank the consultant-collaborators listed at left who have graciously provided algorithms,
code, and insight, and the many labs who have provided datasets to neurodatabase.org, as well
as the members of our Neuroanalysis Advisory Group: • Patricia M. Di Lorenzo • Esther ...
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A database system for electrophysiological data
P Rautenberg, A Sobolev, A Herz... - Transactions on large- ..., 2011 - Springer
... One of the first attempts to build a database of neurophysiological data was the neurodatabase.org
project [5], which was established 2004, funded by the NIMH Human Brain Project and created by
the Laboratory of Neuroinformatics at Weill Medical College of Cornell ...
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Mind your data with Neurodatabase. org
E Hitt - The Scientist, 2004 - cat.inist.fr
... Titre du document / Document title. Mind your data with Neurodatabase.org. Auteur(s) /
Author(s). HITT Emma ; Résumé / Abstract. New database makes sense of neurophysiological
information Revue / Journal Title. The Scientist ISSN 0890-3670 Source / Source. 2004, vol. ...
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A dendrogram approach to the structure of spike trains
[PDF] from biomedcentral.com
C Houghton - BMC Neuroscience, 2011 - biomedcentral.com
... This quantification is applied to an example spike- train data set described in [2] and made
available on http://neurodatabase.org. The data consist of single cell recordings from the
nucleus of the solitary tract in rat during presentation of taste stimuli. ...
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[PDF] Deliverable D8-6 Towards generic tools for computational neuroscience: a perspective
[PDF] from andrewdavison.info
KTH Stockholm - andrewdavison.info
... the CRCNS (Collaborative Research in Computational Neuroscoemce) data sharing website.
http://www. crcns.org • the Neurodatabase.org Data Server. http://neurodatabase.org • the Cell
Centered Database. http://ccdb.ucsd.edu • the INCF Japan Node. http://www.neuroinf.jp ...
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Spike train analysis toolkit: enabling wider application of information-theoretic techniques to neurophysiology
[HTML] from nih.gov
DH Goldberg, JD Victor, EP Gardner... - Neuroinformatics, 2009 - Springer
... This resource integrates the neurophysiology data repository at Neurodatabase.org (Gardner
et al. ... One of these is illustrated in some detail; two others are briefly noted below. Many of the
datasets used in these analyses are available via neurodatabase.org. ...
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[PDF] Bibliography on neuroinformatics
[PDF] from dtu.dk
FÅ Nielsen - Rigshospitalet and Technicial University of ..., 2004 - hendrix.imm.dtu.dk
... (Gardner et al., 2001b; Gardner et al., 2001a), http://neurodatabase.org/, http://brainml.org/ ...
APLYSIA ("APLYSIA Proficienty Lets You Scan Indentifying Attributes") once available from
http://mollusc.med.cornell.edu/ seems to have been superseded http://neurodatabase.org/. ...
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[PDF] Neurowissenschaftliche Datenbanken - eine Herausforderung
[PDF] from uni-luebeck.de
KML Menne... - Datenbank-Spektrum, 2004 - isip.uni-luebeck.de
... von Säugetieren beschäftigt. Die Datenbank heißt wie die Webadresse, unter der
sie zu finden ist: Neurodatabase.org. Im navEgate Projekt schließlich [Menne et
al. 2004], in ... 3.2 Neurodatabase.org Das, was das FMRI Data ...
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Spatial knowledge representation for visualization of human anatomy and function
R Schubert, K Höhne, A Pommert, M Riemer... - ... Processing in Medical ..., 1993 - Springer
... Typical representatives are Page 3. 170 ADAM [16], BrainStorm [6], the Anatom-Tutor [19]
or the NeuroDatabase [28]. These systems offer a convenient access to different anatomical
information, but the related images are always precomputed views. ...
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[HTML] Neuroinformatics: from bioinformatics to databasing the brain
[HTML] from nih.gov
TM Morse - Bioinformatics and biology insights, 2008 - ncbi.nlm.nih.gov
... 3). Figure 3. Figure 3 Searching for entries at Neurodatabase.org. This is a pilot project to explore
ways in which electrophysiological data can be stored and then retrieved. ... 2007a. [Accessed 21
March 2008]. LNI neurodatabase.org [online] URL: http://neurodatabase.org. ...
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[CITATION] Medical Volume Visualization Based on" Intelligent Volumes
K Hohne, A Pommert, M Riemer, T Schiemann... - ... : Advances and Challenges, 1994
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Trial-by-trial estimation of amplitude and latency variability in neuronal spike trains
[PDF] from upf.edu
A Bollimunta, KH Knuth... - Journal of neuroscience methods, 2007 - Elsevier
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Experimental database system for the vascular brain diseases research
P Vcelak, J Polivka, P Maule, P Kratochvil... - ... Abstract: 2nd INCF ..., 2009 - frontiersin.org
... Created database of imaging examinations will allow studying of crucial values and dependencies
of particular parameters in high amount of examinations with clinical data correlations.<br>
Suggested project is not intended to be another imaging neurodatabase. ...
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Terminology for neuroscience data discovery: multi-tree syntax and investigator-derived semantics
[HTML] from nih.gov
D Gardner, DH Goldberg, B Grafstein, A Robert... - Neuroinformatics, 2008 - Springer
... or institution: Figure 2 shows a sample search for Neurodatabase.org resources
relevant to a specific disease type. Selector Terms Allow General or Specific Searches
for Relevant Datasets or Other Resource Contents A major ...
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[BOOK] The synaptic organization of the brain
GM Shepherd - 2004 - books.google.com
... and Description of Dendritic Morphology (http://www.krasnow.gmu.edu/ L-Neuron/index.html),
Development of a 3D Cell-Centered Neuronal Database (http://ncmir.ucsd.edu/NCDB), and
Databases and Data Models Enabling Neuroinformatics (http://neurodatabase.org and http ...
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Informatics in neuroscience
[HTML] from oxfordjournals.org
L French... - Briefings in bioinformatics, 2007 - Oxford Univ Press
... The largest structured database we are aware of is Neurodatabase.org, which contains
data from eleven experiments [82]. ... The Neurodatabase data sets are well annotated
and structured according to the BrainML standard [14]. ...
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[CITATION] Biology workbenches
A Maer, B Saunders, R Unwin... - 2005 - Wiley, Hoboken, NJ
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Dynamic publication model for neurophysiology databases
[PDF] from royalsocietypublishing.org
D Gardner, M Abato... - ... of the Royal ..., 2001 - rstb.royalsocietypublishing.org
Page 1. Dynamic publication model for neurophysiology databases Daniel Gardner*, Michael
Abato, Kevin H. Knuth, Robert DeBellis and Steven M. Erde Department of Physiology,Weill
Medical College of Cornell University, 1300 York Avenue, New York, NY 10021- 4805, USA ...
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Issues in the design of a pilot concept-based query interface for the Neuroinformatics Information Framework
[HTML] from nih.gov
L Marenco, Y Li, ME Martone, PW Sternberg... - Neuroinformatics, 2008 - Springer
... Other mismatches may reflect the fact that different data- bases collect data at different levels
of detail or in different ways (for example, NeuronDB has neuronal properties assigned to specific
neuronal canonical compartments, while Neurodatabase.org (Gardner 2004) uses the ...
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1st INCF Workshop on Global Portal Services for Neuroscience
[PDF] from nature.com
J van Pelt... - 2008 - precedings.nature.com
... Integration of data and services, complexity hidden for users Neurodatabase.org
http://neurodatabase.org Neurophysiology database + tools anatomical visualization
NeuroMorpho.Org http://neuromorpho.org/ Inventory of digitally reconstructed neurons ...
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Data sharing for computational neuroscience
[PDF] from berkeley.edu
JL Teeters, KD Harris, KJ Millman, BA Olshausen... - Neuroinformatics, 2008 - Springer
... The workshop identified data from electrophysiology and from microscopic imaging of neural
activity as resource types whose public availability is still vastly underrepresented- though
at least one pioneer effort exists (NeuroDatabase. org; Gardner 2004). ...
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Identifiable Neuro Ethics Challenges to the Banking of Neuro Data
[PDF] from umn.edu
J Illes... - Minn. JL Sci. & Tech., 2008 - HeinOnline
... 23. See generally Marcia Baringa, Neuroimaging: Still Debated, Brain Image Archives Are
Catching On, 300 SCIENCE 43 (2003); Daniel Gardner, Neurodatabase.org: Networking the
Microelectrode, 7 NATURE NEUROSCIENCE 486 (2004); John D. Van Horn et al., The ...
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The neuroscience information framework: a data and knowledge environment for neuroscience
[HTML] from nih.gov
D Gardner, H Akil, GA Ascoli, DM Bowden... - Neuroinformatics, 2008 - Springer
... A representative set of projects that directly informed our work includes: Sense- Lab,
Neurodatabase.org, the Internet Accessible Tool Registry (IATR), the Surface Management System
Data- base (SumsDB), the Cell-Centered Database, GeneNet- work/WebQTL, and the ...
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Time-resolved and time-scale adaptive measures of spike train synchrony
[PDF] from arxiv.org
T Kreuz, D Chicharro, M Greschner... - Journal of neuroscience ..., 2010 - Elsevier
... As a second application to real data we employ the spike train distances to discriminate single-
unit responses to taste stimuli recorded in the nucleus of the solitary tract (NTS) in rats (Di Lorenzo
and Victor, 2003; data available online at http://neurodatabase.org/, Gardner, 2004 ...
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A multiscale approach for assessing the interactions of environmental and biological systems in a holistic health risk assessment framework
[PDF] from twitdoc.com
PG Georgopoulos - Water, Air, & Soil Pollution: Focus, 2008 - Springer
Page 1. A Multiscale Approach for Assessing the Interactions of Environmental and
Biological Systems in a Holistic Health Risk Assessment Framework Panos G.
Georgopoulos Received: 15 November 2006 /Accepted: 22 February ...
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NeuroExtract: facilitating neuroscience-oriented retrieval from broadly-focused bioscience databases using text-based query mediation
[HTML] from 171.67.114.118
CJ Crasto, P Masiar... - Journal of the American Medical ..., 2007 - jamia.bmj.com
... VLDB 1996:203-214. ?: Gardner D. . Notes on neuroscience ontologies. In: Neurodatabase.
org; 2004. ?: Marenco L,; Wang TY,; Shepherd G,; Miller PL,; Nadkarni P. . QIS: a framework
for biomedical database federation. J Am Med Inform Assoc 2004;11(6):523-534. ...
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Computational intelligence in electrophysiology: Trends and open problems
C Günay, T Smolinski, W Lytton, T Morse... - ... intelligence in biology, 2008 - Springer
... 14.2.1 Introduction There are 176 neuroscience databases listed in the Neuroscience Database
Gateway [7]. Only one of these, Neurodatabase [32], currently has electrical recordings available,
indicating that electrophysiology datasets are currently rarely publicly available. ...
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Cengiz Günay1, Tomasz G. Smolinski1, William W. Lytton2, Thomas M. Morse3 Padraig Gleeson4, Sharon Crook5, Volker Steuber4, 6, Angus Silver4, Horatiu Voicu7, ...
[PDF] from arizona.edu
GA Mitra8... - ... in biology: current trends and open ..., 2008 - books.google.com
... 1 Introduction There are 176 neuroscience databases listed in the Neuroscience Database
Gateway [7]. Only one of these, Neurodatabase [32], currently has electrical recordings available,
indicating that electrophysiology datasets are currently rarely publicly available. ...
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[HTML] Surrogate spike train generation through dithering in operational time
[HTML] from nih.gov
S Louis, GL Gerstein, S Grün... - Frontiers in ..., 2010 - ncbi.nlm.nih.gov
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[PDF] What can spike train distances tell us about the neural code?
[PDF] from upf.edu
D Chicharro, T Kreuz... - J Neurosci Methods, 2011 - cns.upf.edu
... Furthermore, apart from the simulated data, in Section 3.3 we also use exemplary
experimental recordings. These data were delivered via http://neurodatabase.org, a
neuroinformatics resource funded by the Human Brain Project (Gardner, 2004). ...
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Geometrical interpretation of fMRI-guided MEG/EEG inverse estimates
[PDF] from mit.edu
SP Ahlfors... - NeuroImage, 2004 - Elsevier
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What time scale parametric spike train distances can tell us about the neural code?
D Chicharro, T Kreuz... - Journal of Neuroscience Methods, 2011 - Elsevier
... Furthermore, apart from the simulated data, in Section 3.3 we also use exem- plary
experimental recordings. These data were delivered via http://neurodatabase.org, a
neuroinformatics resource funded by the Human Brain Project (Gardner, 2004). ...
Import into BibTeX
Database-Aided Diagnosis in Digital Mammography
[PDF] from dtic.mil
J Sklansky - 2000 - DTIC Document
... Task 6. Construct a mapped database system (originally called "neurodatabase system,")
consisting of a graphical user interface, a relational map, the visual neural classifier, and the
proven mammographic database, (month 17) This Task was completed successfully, 5 months ...
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The NIF DISCO framework: facilitating automated integration of neuroscience content on the web
[PDF] from ucsd.edu
L Marenco, R Wang, GM Shepherd... - Neuroinformatics, 2010 - Springer
... Architecture Management System), Willy WaiHo Wong and Maryann Martone (Cell Centered
Database), Rolf Kotter (CocoDat), David Kennedy (Internet Brain Volume Database), Maryam
Halavi and Giorgio Ascoli (Neuromorpho.org), and Daniel Gardner (Neurodatabase.org). ...
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DATA-MEAns: an open source tool for the classification and management of neural ensemble recordings
MP Bonomini, JM Ferrandez, JA Bolea... - Journal of neuroscience ..., 2005 - Elsevier
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[CITATION] Bioinformatic databases
[PDF] from njit.edu
S DATABASES - 2008 - Wiley Online Library
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SynapticDB, Effective Web-based Management and Sharing of Data from Serial Section Electron Microscopy
[HTML] from nih.gov
B Shi, J Bourne... - Neuroinformatics, 2010 - Springer
... al. 2007; Martone et al. 2004; Marenco et al. 2010, http://ccdb.ucsd.edu/index.shtm;
http://neuinfo.org/; http://neurodatabase.org/; http://neuromorpho.org/). Synap- ticDB
is the first integrated system for ssEM studies. It promotes ...
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Online variational inference for state-space models with point-process observations
AZ Mangion, K Yuan, V Kadirkamanathan... - Neural ..., 2011 - MIT Press
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[PDF] Section I Evaluation and Benefit
[PDF] from nih.gov
BC Benefit - ncbi.nlm.nih.gov
Page 1. Contents AMIA Board of Directors, 1990-1991 1991 SCAMC Program
Committee 1991 SCAMC Reviewer List Assessing Our Accomplishments Section I
Evaluation and Benefit FieldTrialsofMedical Decision-Aids: Potential ...
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[PDF] BrainFrame: a knowledge visualization system for the neurosciences
[PDF] from psu.edu
SJ Barnes... - ... and Data Analysis 2009, Proccedings of SPIE, 2009 - Citeseer
... In KOSLOW, SH AND SUBRAMANIAM, S. (eds.): Databasing the Brain. John Wiley
& Sons Inc., Canada, 2005, 47-67. [Gar04] GARDNER, D.: Neurodatabase.org:
networking the microelectrode. Nat. Neurosci., 7 (2004), 486-487. ...
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[PDF] Stochastic generation of biologically accurate brain networks
[PDF] from tamu.edu
A Aluri - 2005 - research.cs.tamu.edu
Page 1. STOCHASTIC GENERATION OF BIOLOGICALLY ACCURATE BRAIN NETWORKS A
Thesis by ARAVIND ALURI Submitted to the Office of Graduate Studies of Texas A&M University
in partial fulfillment of the requirements for the degree of MASTER OF SCIENCE ...
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CARMEN [Code, Analysis, Repository & Modelling for e-Neuroscience]
[PDF] from ed.ac.uk
G Pryor - 2008 - era-test.lib.ed.ac.uk
... within the discipline; ? the provision of use cases from the ongoing requirements gathering
programme that will assist in the definition of terms; ? the Technical Moderator's critical examination
of existing systems in neuroscience and related fields (eg http://neurodatabase.org) to ...
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Characterization of information and causality measures for the study of neuronal data
[PDF] from tesisenred.net
D Chicharro Raventós - 2011 - tesisenred.net
Page 1. Characterization of information and causality measures for the study of neuronal data
Daniel Chicharro Ravent´os Tesi Doctoral UPF / 2011 Supervised by Dr. Ralph Gregor
Andrzejak Department of Information and Communication Technologies ...
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Common data model for neuroscience data and data model exchange
[HTML] from 171.67.114.118
D Gardner, KH Knuth, M Abato... - Journal of the ..., 2001 - 171.67.114.118
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MatOFF: A tool for analyzing behaviorally complex neurophysiological experiments
[HTML] from nih.gov
A Genovesio... - Journal of neuroscience methods, 2007 - Elsevier
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A novel framework for storage, analysis and integration through mediation of large-scale electrophysiological data
B Ljungquist, P Petersson... - ... (NER), 2011 5th ..., 2011 - ieeexplore.ieee.org
... Vol. 206. Addison- wesley Reading, MA, 1995. [7] Garcia, Samuel, and Nicolas
Fourcaud-Trocmé. "OpenElectrophy: an electrophysiological data- and analysis-sharing
framework." Frontiers in Neuroinformatics 3 (2009)9. [8] Gardner, D. "Neurodatabase. ...
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Reusable architectural decision model for model and metadata repositories
[PDF] from tuwien.ac.at
C Mayr, U Zdun... - Formal Methods for Components and ..., 2009 - Springer
Page 1. Reusable Architectural Decision Model for Model and Metadata Repositories
Christine Mayr, Uwe Zdun, and Schahram Dustdar Distributed Systems Group
Information System Institute Vienna University of Technology ...
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[HTML] A bottom-up approach to data annotation in neurophysiology
[HTML] from nih.gov
J Grewe, T Wachtler... - Frontiers in Neuroinformatics, 2011 - ncbi.nlm.nih.gov
We are sorry, but NCBI web applications do not support your browser,
and may not function properly. More information here... ...
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View-based model-driven architecture for enhancing maintainability of data access services
[PDF] from univie.ac.at
C Mayr, U Zdun... - Data & Knowledge Engineering, 2011 - eprints.cs.univie.ac.at
Page 1. View-based Model-Driven Architecture for Enhancing Maintainability of Data
Access Services Christine Mayra, Uwe Zdunb, Schahram Dustdara aDistributed
Systems Group, Information Systems Institute, Vienna University ...
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LONI & Co: Die epistemische Spezifität digitaler Wissensräume in der kognitiven Neurowissenschaft
L Huber - Berichte zur Wissenschaftsgeschichte, 2011 - Wiley Online Library
Page 1. DOI: 10.1002/bewi.201101502 Lara Huber LONI & Co: Die epistemische Spezifität
digitaler Wissensräume in der kognitiven Neurowissenschaft1 Summary: LONI & Co: About the
Epistemic Specificity of Digital Spaces of Knowledge in Cognitive Neuroscience. ...
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